The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5′TOP sequence - Agropolis
Article Dans Une Revue Nucleic Acids Research Année : 2015

The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5′TOP sequence

Résumé

La-related protein 1 (LARP1) regulates the stability of many mRNAs. These include 5′TOPs, mTOR-kinase responsive mRNAs with pyrimidine-rich 5′ UTRs, which encode ribosomal proteins and translation factors. We determined that the highly conserved LARP1-specific C-terminal DM15 region of human LARP1 directly binds a 5′TOP sequence. The crystal structure of this DM15 region refined to 1.86 Å resolution has three structurally related and evolutionarily conserved helix-turn-helix modules within each monomer. These motifs resemble HEAT repeats, ubiquitous helical protein-binding structures, but their sequences are inconsistent with consensus sequences of known HEAT modules, suggesting this structure has been repurposed for RNA interactions. A putative mTORC1-recognition sequence sits within a flexible loop C-terminal to these repeats. We also present modelling of pyrimidine-rich single-stranded RNA onto the highly conserved surface of the DM15 region. These studies lay the foundation necessary for proceeding toward a structural mechanism by which LARP1 links mTOR signalling to ribosome biogenesis.
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Dates et versions

hal-04821619 , version 1 (18-12-2024)

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Roni Lahr, Seshat Mack, Annie Héroux, Sarah Blagden, Jean-Marc Deragon, et al.. The La-related protein 1-specific domain repurposes HEAT-like repeats to directly bind a 5′TOP sequence. Nucleic Acids Research, 2015, 43 (16), pp.8077-8088. ⟨10.1093/nar/gkv748⟩. ⟨hal-04821619⟩
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